{"id":2,"date":"2016-05-10T03:48:21","date_gmt":"2016-05-10T03:48:21","guid":{"rendered":"http:\/\/www.col-res.ie\/?page_id=2"},"modified":"2025-04-29T09:43:10","modified_gmt":"2025-04-29T09:43:10","slug":"sample-page","status":"publish","type":"page","link":"https:\/\/www.col-res.ie\/?page_id=2","title":{"rendered":"Publications"},"content":{"rendered":"\n

Published papers<\/strong><\/p>\n\n\n\n

Herzog, M. K. M., Peters, A., Shayya, N., Cazzaniga, M., Kaka Bra, K., Arora, T., \u2026 Hardt, W. D. (2025). Comparing Campylobacter jejuni<\/em> to three other enteric pathogens in OligoMM12<\/sup> mice reveals pathogen-specific host and microbiota responses. Gut Microbes<\/em>, 17<\/em>(1). https:\/\/doi.org\/10.1080\/19490976.2024.2447832<\/a><\/p>\n\n\n\n

O\u2019Sullivan, D.; Arora, T.; Durif, C.; Uriot, O.; Brun, M.; Riu, M.; Foguet-Romero, E.; Samarra, I.; Domingo-Almenara, X.; Gahan, C.G.M.; et al. Impact of Western Diet on Enterohemorrhagic Escherichia coli<\/em> Colonization in the Human In Vitro<\/em> Mucosal Artificial Colon as Mediated by Gut Microbiota. Nutrients<\/em> 2024<\/strong>, 16<\/em>, 2046. https:\/\/doi.org\/10.3390\/nu16132046<\/a><\/p>\n\n\n\n

Shayya NW, Bandick R, Busmann LV, Mousavi S, Bereswill S and Heimesaat MM (2023) Metabolomic signatures of intestinal colonization resistance against Campylobacter jejuni<\/em> in mice. Front. Microbiol<\/em>. 14:1331114. doi: 10.3389\/fmicb.2023.1331114<\/p>\n\n\n\n


Keane JM, Cazzaniga M, Gahan CGM. Akkermansia muciniphila<\/em> in infectious disease: A new target for this next-generation probiotic? Science Progress.<\/em> 2024;107(1).<\/p>\n\n\n\n

doi:10.1177\/00368504241231159<\/p>\n\n\n\n

Sara M. de Cripan, Trisha Arora, Adri\u00e0 Olom\u00ed, N\u00faria Canela, Gary Siuzdak, and Xavier Domingo-Almenara. Predicting the Predicted: A Comparison of Machine Learning-Based Collision Cross-Section Prediction Models for Small Molecules Analytical Chemistry<\/em> 2024<\/strong> 96<\/em> (22), 9088-9096 DOI: 10.1021\/acs.analchem.4c00630<\/p>\n\n\n\n

Shayya, N. W., Mousavi, S., Stingl, K., Bereswill, S., & Heimesaat, M. M. (2025). Differential antibiosis predisposes mice to Campylobacter jejuni<\/em> infection: Deeper insights into the impact of the gut microbiota composition in colonization resistance. European Journal of Microbiology and Immunology<\/em> (published online ahead of print 2025). https:\/\/doi.org\/10.1556\/1886.2024.00140<\/a><\/p>\n\n\n\n

Gaissmaier MS, Laganenka L, Herzog MK, Bakkeren E, Hardt W.2022.The Mobilizable Plasmid P3 of Salmonella enterica Serovar Typhimurium SL1344 Depends on the P2 Plasmid for Conjugative Transfer into a Broad Range of Bacteria In Vitro and In Vivo. J Bacteriol.<\/em> 204:e00347-22. https:\/\/doi.org\/10.1128\/jb.00347-22<\/a><\/p>\n\n\n\n

Cherrak, Y., Salazar, M.A., N\u00e4pflin, N. et al.<\/em> Non-canonical start codons confer context-dependent advantages in carbohydrate utilization for commensal E. coli<\/em> in the murine gut. Nat Microbiol<\/em> 9<\/strong>, 2696\u20132709 (2024). https:\/\/doi.org\/10.1038\/s41564-024-01775-x<\/a><\/p>\n\n\n\n

Jain, A., Morris, M.T., Berardi, D. et al.<\/em> Charting the metabolic biogeography of the colorectum in cancer: challenging the right sided versus left sided classification. Mol Cancer<\/em> 23<\/strong>, 211 (2024). https:\/\/doi.org\/10.1186\/s12943-024-02133-5<\/a><\/p>\n\n\n\n

Burz SD, Causevic S, Dal Co A, Dmitrijeva M, Engel P, Garrido-Sanz D, Greub G, Hapfelmeier S, Hardt W, Hatzimanikatis V, Heiman CM, Herzog MK, Hockenberry A, Keel C, Keppler A, Lee S, Luneau J, Malfertheiner L, Mitri S, Ngyuen B, Oftadeh O, Pacheco AR, Peaudecerf F, Resch G, Ruscheweyh H, Sahin A, Sanders IR, Slack E, Sunagawa S, Tackmann J, Tecon R, Ugolini GS, Vacheron J, van der Meer JR, Vayena E, Vonaesch P, Vorholt JA.2023.From microbiome composition to functional engineering, one step at a time. Microbiol Mol Biol Rev 87:e00063-23. https:\/\/doi.org\/10.1128\/mmbr.00063-23<\/a><\/p>\n\n\n\n

Shareefdeen, Hiba; Hill, Colin. The gut virome in health and disease: new insights and associations. Current Opinion in Gastroenterology<\/em> 38(6): p 549-554, November 2022. | DOI: 10.1097\/MOG.0000000000000885<\/p>\n\n\n\n

Mariana Izquierdo, Deborah O\u2019Sullivan, Oph\u00e9lie Uriot, Morgane Brun, Claude Durif, Sylvain Denis, Pablo Gallardo, Cormac G M Gahan, Lucie Etienne-Mesmin, St\u00e9phanie Blanquet-Diot and Mauricio J. Farfan (2025<\/strong>). Microbiota and metabolome dynamics induced by Shiga toxin-producing E. coli in an in vitro model of an infant’s colon. Microbial Cell<\/strong> 12: 74-92. doi: 10.15698\/mic2025.04.847<\/p>\n\n\n\n

Herzog, M. K. M., Cazzaniga, M., Peters, A., Shayya, N., Beldi, L., Hapfelmeier, S., \u2026 Hardt, W. D. (2023). Mouse models for bacterial enteropathogen infections: insights into the role of colonization resistance. Gut Microbes<\/em>, 15<\/em>(1). https:\/\/doi.org\/10.1080\/19490976.2023.2172667<\/a><\/p>\n\n\n\n

Kroon, S., Malcic, D., Weidert, L. et al.<\/em> Sublethal systemic LPS in mice enables gut-luminal pathogens to bloom through oxygen species-mediated microbiota inhibition. Nat Commun<\/em> 16<\/strong>, 2760 (2025). https:\/\/doi.org\/10.1038\/s41467-025-57979-0<\/a><\/p>\n\n\n\n

Liu, Y., Ma, X., Cazzaniga, M., Gahan, C. G., den Besten, H. M. and Abee, T. (2024) ‘Nano in micro: novel concepts in foodborne pathogen transmission and pathogenesis’, Annual Review of Food Science and Technology, 12(1), 2 (24pp). https:\/\/doi.org\/10.1146\/annurev-food-111523-121811<\/a><\/p>\n\n\n\n

Book Chapter<\/strong><\/p>\n\n\n\n

Sara M de Cripan, Trisha Arora, Adri\u00e0 Olom\u00ed, Jasen P Finch, Xavier Domingo-Almenara. Untargeted GC-MS Data Processing and Metabolite Identification Using eRah<\/a>. https:\/\/doi.org\/10.1007\/978-3-031-44256-8_6<\/a><\/p>\n\n\n\n

<\/p>\n","protected":false},"excerpt":{"rendered":"

Published papers Herzog, M. K. M., Peters, A., Shayya, N., Cazzaniga, M., Kaka Bra, K., Arora, T., \u2026 Hardt, W. D. (2025). Comparing Campylobacter jejuni to three other enteric pathogens in OligoMM12 mice reveals pathogen-specific host and microbiota responses. Gut Microbes, 17(1). https:\/\/doi.org\/10.1080\/19490976.2024.2447832 O\u2019Sullivan, D.; Arora, T.; Durif, C.; Uriot, O.; Brun, M.; Riu, M.; Foguet-Romero, E.; Samarra, I.; Domingo-Almenara,… Continue reading Publications<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"open","template":"","meta":{"footnotes":""},"class_list":["post-2","page","type-page","status-publish","hentry","entry"],"_links":{"self":[{"href":"https:\/\/www.col-res.ie\/index.php?rest_route=\/wp\/v2\/pages\/2","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.col-res.ie\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.col-res.ie\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.col-res.ie\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.col-res.ie\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=2"}],"version-history":[{"count":11,"href":"https:\/\/www.col-res.ie\/index.php?rest_route=\/wp\/v2\/pages\/2\/revisions"}],"predecessor-version":[{"id":1447,"href":"https:\/\/www.col-res.ie\/index.php?rest_route=\/wp\/v2\/pages\/2\/revisions\/1447"}],"wp:attachment":[{"href":"https:\/\/www.col-res.ie\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=2"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}